hydrocarbon degradation by bacteria
Protoc. While in the substrate mixtures, toluene and benzene enhance the biodegradation of phenol; however, phenol inhibits the biodegradation of benzene and toluene (Abuhamed et al., 2004). The primary factors restricting the biodegradation efficiency of petroleum hydrocarbons are as follows: (1) limited bioavailability of petroleum hydrocarbons to bacteria, and (2) the fact that bacterial cell contact with hydrocarbon substrates is a requirement before introduction of molecular oxygen into molecules by the functional oxygenases (Vasileva-Tonkova et al., 2008; Hua and Wang, 2014). Kumar, M., V. Leon, A. D. S. Materano, O. Zhang L., Zhang C., Cheng Z., Yao Y., Chen J. Development of a duplex droplet digital PCR assay for absolute quantitative detection of "Candidatus Liberibacter asiaticus". Methods 7, 335336 (2010). Article open access Abstract Oil contamination is a worldwide concern now. Hydrocarbon contaminated soil and marine sources have been the common choice for the isolation of such hydrocarbon combining and degrading bacteria [2] .Polycyclic aromatic hydrocarbons. Internet Explorer). Methanoliparum cultures at 55C. Sci. (2014). Degradation of petroleum hydrocarbons (C6C40) and crude oil by a novel Dietzia strain. Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine alpine soils. Thank you for visiting nature.com. Front. The bacterial strains Acinetobacter sp. Abbasnezhad H., Gray M., Foght J. M. (2011). Dolfing, J., Larter, S. R. & Head, I. M. Thermodynamic constraints on methanogenic crude oil biodegradation. Zengler, K., Richnow, H. H., Rossello-Mora, R., Michaelis, W. & Widdel, F. Methane formation from long-chain alkanes by anaerobic microorganisms. (2013). Environ. Microbiol. You are using a browser version with limited support for CSS. Wang, Y., Wegener, G., Ruff, S. E. & Wang, F. Methyl/alkyl-coenzyme M reductase-based anaerobic alkane oxidation in Archaea. Wang, Y., Wegener, G., Hou, J., Wang, F. & Xiao, X. 56, 19191925 (1990). Chemical dispersants enhance the activity of oil-and gas condensate-degrading marine bacteria. Due to the hydrophobicities and low water solubilities of most petroleum hydrocarbons, the biodegradation rate is generally limited in the environment. These species are called hydrocarbonoclastic bacteria (HCB), and they play a key role in the removal of hydrocarbons from polluted and non-polluted environments ( Harayama et al., 2004; Head et al., 2006; Yakimov et al., 2007; Wang et al., 2010a, b ). Microbial biodegradation The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Bacteria with such functions are often screened for use as environmental remediation agents, accelerating the removal of petroleum hydrocarbon pollutants from the environment (Kaczorek et al., 2012; Krasowska and Sigler, 2014). Bathyarchaeota set as outgroup. Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. (2015) constructed a halotolerant Hydrocarbon Utilizing Bacterial Consortium (HUBC) consisting of the bacterial isolates Ochrobactrum sp., Stenotrophomonas maltophilia and Pseudomonas aeruginosa that was found to be good at degrading crude oil (3% v/v), with a degradation percentage as high as 83.49%. 7 Identification of coenzyme M derivatives in cultures by HPLC-MS/MS based on the corresponding retention times. Ludwig, W. et al. Phylogenetic analysis of long-chain hydrocarbon-degrading bacteria and Mol. CAAS-ASTIP-2016-BIOMA), the Innovation Team Project of Universities in Guangdong Province (no. Letunic, I. Inhibition of phenanthrene mineralization by nonionic surfactants in soil-water systems. Biodegradation of polycyclic aromatic hydrocarbons (PAHs) by bacterial Sarkar P., Roy A., Pal S., Mohapatra B., Kazy S. K., Maiti M. K., et al. 8 Identification of coenzyme M derivatives in cultures incubated with specific hydrocarbons. A., Makarov S. O., Cunningham C. J., et al. (2017). Robust hydrocarbon degradation and dynamics of bacterial communities during nutrient-enhanced oil spill bioremediation. Bacterial adherence at the hydrocarbon-water interface. Borrel, G. et al. Technol. Evol. Nature 426, 344352 (2003). Isolation and characterization of Methanothermobacter crinale sp. 6 Relative transcript abundances of alkane-degrading and methane-producing pathways coding genes. Evol. Quinlan, A. R. BEDTools: the Swiss-army tool for genome feature analysis. Appl Environ . Researchers found that these five bacteria showed synergistic pyrene degradation due to the following aspects: (1) The Bacillus strain enhanced the bioavailability of the pyrene by producing biosurfactant, (2) two Mycobacterium strains contributed to the initiation of pyrene degradation, and (3) Novosphingobium and Ochrobactrum efficiently degraded the intermediates of pyrene. Isolation and characterization of a monoaromatic hydrocarbon-degrading bacterium. With the sharp increase in population and modernization of society, environmental pollution resulting from petroleum hydrocarbons has increased, resulting in an urgent need for remediation. Article Several copies of fadD and ACADM were detected and only copies with the highest transcript abundances are shown. & Glckner, F. O. SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. This is related to the physico-chemical properties of the substrate and its bioavailability, which affect the contact, transport and transformation of bacteria to hydrocarbon substrates (Varjani and Upasani, 2016). Bioremediation approaches for organic pollutants: a critical perspective. The site is secure. Bioinformatics 28, 18231829 (2012). High throughput single-cell cultivation on microfluidic streak plates. Quantitatively predicting bacterial adhesion using surface free energy determined with a spectrophotometric method. 10281049 (Springer, 2006). Wiley Interdiscip. (2015). Details of all copies are included in Supplementary Table 7. a and b, hexadecyl-CoM and the corresponding 3 characterized fragments (in blue) in cell extracts from cultures with hexadecane (C16H34) addition. Ferry, J. G. & Lessner, D. J. Methanogenesis in marine sediments. 1b1d. However, these compounds are slowly degraded by a large variety of microorganisms. Antonie Van Leeuwenhoek 110, 12811286 (2017). AnnoTree: visualization and exploration of a functionally annotated microbial tree of life. During petroleum production, storage and transportation, refining and processing, as well as spills and discharges of petroleum hydrocarbons often occur as a result of blowout accidents during oilfield development, leakage from oil pipelines and storage tanks, oil tanker and tanker leakage accidents, oil well waxing, and during overhauls of refineries and petrochemical production equipment (Chaerun et al., 2004; Chen et al., 2015; Wang C. et al., 2018). Branched hydrocarbons and cyclic hydrocarbons are also degraded by bacteria. Microbiol. Background The sources of the code and programs used for analyses are mentioned in theMethods, and are also available at GitHub (https://github.com/liupfskygre/Methanoliparum_MS_code/tree/main). (2007). A Comprehensive Review of Aliphatic Hydrocarbon Biodegradation by Bacteria was funded by DFG under Germanys Excellence Strategy-EXC-2077-390741603 and the Max Planck Society. 2, 442452 (2008). (2016). Bacterial hydrocarbon contaminants degradation: A cleaner perspective Article Hence, to effectively reduce the microbial remediation period and improve the remediation rate, using a combination of microbial remediation technology and other technologies such as electrokinetic remediation technology (Ma et al., 2018), photocatalytic remediation technology (Xu et al., 2017), nanotechnology (Alabresm et al., 2018) and bioreactor technology (Safdari et al., 2018) is an effective strategy to accelerate the removal of petroleum hydrocarbon pollutants. Data shown are mean standard deviation (n=3 biologically independent replicates). Microbial biodegradation is the use of bioremediation and biotransformation methods to harness the naturally occurring ability of microbial xenobiotic metabolism to degrade, transform or accumulate environmental pollutants, including hydrocarbons (e.g. Careers, Unable to load your collection due to an error. A novel method for the synergistic remediation of oil-water mixtures using nanoparticles and oil-degrading bacteria. and transmitted securely. (2017). Rling W. F., Milner M. G., Jones D. M., Fratepietro F., Swannell R. P., Daniel F., et al. Indeed, whether various biosurfactants stimulate or inhibit the bioremediation of pollutants is dependent on the physico-chemical properties of the surfactants, types of pollutants and physiological characteristics of the functional microorganisms (Hua and Wang, 2014). The 16S rRNA gene sequences were added to the consensus tree with quick add option, thus no bootstrap values are available. A large-scale evaluation of algorithms to calculate average nucleotide identity. 2015 ). Deep-sea oil plume enriches indigenous oil-degrading bacteria. (2017). Methanoliparum (red) with the genes involved in benzoyl-CoA degradation in the model organisms Thauera aromatica (green) and Rhodopseudomonas palustris (blue). Although people are becoming increasingly concerned about the toxic effects of oil pollution on humans and animals in affected areas, (Dez et al., 2007; Mason et al., 2012), the strong toxic impacts of petroleum hydrocarbons on affected microbial communities are often overlooked (Rivers et al., 2013; Overholt et al., 2015). b, Genome based average Amino Acid Identity (AAI). Cheng, L. et al. Nature 601, 257262 (2022). Google Scholar. A large amount of bacterial species with petroleum hydrocarbon-degrading ability have been exploited and applied in bioremediation. Degradation Of Hydrocarbons (oil Spills) A. Ilzins, I. Galindo-Castro, S. L Fuenmayor. Methanoliparia. petroleum hydrocarbon-degrading bacteria, petroleum oil, bioremediation, bacterial consortia, environmental factors, enzymes. Endophytic bacteria isolated from Chelidonium majus L. exhibit potential for hydrocarbons degradation and biosurfactant production. Extended Data Fig. The wide distribution of Ca. The purpose of this review article is to provide some suggestions for the future development of bacterial remediation of petroleum hydrocarbons on the basis of previously published studies related to new advances in the area of bacterial remediation of petroleum hydrocarbons. Many normal and extreme bacterial species have been isolated and utilized as biodegraders for dealing with petroleum hydrocarbons. However, the adsorption in degradation process is rarely studied. (1983) investigated the toxicity of naphthalene, 1-methylnaphthalene, and 2-methylnaphthalene as well as their oxygenated derivatives to bacterial cells of Agmenellum quadruplicatum, and found that these compounds produced no significant inhibitory effects on bacterial growth. (2014). CAS Australia. The .gov means its official. 138, 103927 (2019). van Dorst J., Siciliano S. D., Winsley T., Snape I., Ferrari B. C. (2014). ADS Extensive laboratory and field studies have been devoted to solving this problem. Am. Extended Data Fig. Curr. Ron and Rosenberg (2014) found that adherence of hydrophobic pollutants to bacterial cells is mainly related to hydrophobic fimbriae, fibrils, outer-membrane proteins and lipids, as well as certain small molecules present in cell surfaces such as gramicidin S and prodigiosin. Based on this view, Varjani et al. PubMedGoogle Scholar. Preferential degradation of long-chain alkyl substituted hydrocarbons in heavy oil under methanogenic conditions. (2007) found that the adherence of Bacillus sp. Accordingly, there is a constant threat of contamination wherever oil is exploited when coupled with an insufficient ability to deal with oil-contaminated environments, especially in extreme or unique environments such as polar regions, deep sea areas, deserts, and wetlands. Kang, D. D. et al. ISSN 1476-4687 (online) 22, 434444 (1999). J. Mol. Rev. Enhancement of solubilization and biodegradation of diesel oil by biosurfactant from. Alteromonas as a key agent of polycyclic aromatic hydrocarbon biodegradation in crude oil-contaminated coastal sediment. (2015). Megharaj M., Ramakrishnan B., Venkateswarlu K., Sethunathan N., Naidu R. (2011). at day 31 and 55, while sampling at one time point (day 55) with 3 replicates (designated as r1-r3) was performed for control cultures without n-hexadecane amendment (Con.). c and d, eicosyl-CoM and 3 characterized fragments (in blue) in cell extracts from cultures with eicosane (C20H42) additions. Nat. This paper provides an overview of the recent literature referring to the usage of bacteria as biodegraders, discusses barriers regarding the implementation of this microbial technology, and provides suggestions for further developments. These bacteria and the bacterial mixture can degrade phenanthrene, anthracene, pyrene and benzo [a]pyrene. Nucleic Acids Res. Biol. Xu X., Zhai Z., Li H., Wang Q., Han X., Yu H. (2017). Jahromi H., Fazaelipoor M. H., Ayatollahi S., Niazi A. Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper. The methanogenic degradation of oil hydrocarbons can proceed through syntrophic partnerships of hydrocarbon-degrading bacteria and methanogenic archaea1,2,3. Nat. J. Mol. Mechanisms of membrane toxicity of hydrocarbons. Biotechnol. Hybridization of Ca. This is because the first step in the degradation process of petroleum oil often requires the participation of bacterial membrane-bound oxygenases, which require direct and effective contact between bacterial cells and petroleum hydrocarbon substrates. Suflita, J. M., Davidova, I. Hahn, C. J. et al. 8600 Rockville Pike & Banfield, J. F. dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication. Rev. FOIA mBio 10, e01814-19 (2019). Rev. MathSciNet Z.Z., J.L., M.Y. 2 Epifluorescence micrographs of different community members of the oily sludge. Many isolated bacteria possess the ability to mineralize chemically simple petroleum hydrocarbons completely, such as linear alkanes, as long as these bacteria possess all of the enzymes for the targeted substrate (Head et al., 2006; Seth-Smith, 2010; Margesin et al., 2013). Synergistic degradation of pyrene by five culturable bacteria in a mangrove sediment-derived bacterial consortium. A comparative intracellular proteomic profiling of. Expanding anaerobic alkane metabolism in the domain of Archaea. JCYJ20200109105010363), the Fundamental Research Funds for the Central Universities (LZUJBKY-2021-KB16), the Central Public-interest Scientific Institution Basal Research Fund (Y2021PT02, Y2021XK06). Abed R. M. M., Al-Kharusi S., Al-Hinai M. (2015). The aerobic bacteria use different types of oxygenases, including monooxygenase, cytochrome-dependent oxygenase and dioxygenase, to insert one or two atoms of oxygen into their targets. In orange, alkane activation and conversion to a fatty acid; in blue, beta oxidation pathway and in red, the ACS/CODH complex and the methanogenesis pathway. Methanoliparum species. Fuentes S., Barra B., Caporaso J. G., Seeger M. (2015). ISME J. Thavasi R., Jayalakshmi S., Baalasubramanian T., Banat I. M. (2006). Given the complexity of the petroleum components, construction of the minimal functional bacterial consortium or genetic engineering bacteria for bioremediation of petroleum oil has become a trend in this field (Dvok et al., 2017). The continuous development and improvement of microbial remediation technology has also provided a new method for the remediation of petroleum hydrocarbon pollution, which has attracted much attention (Dombrowski et al., 2016; Dvok et al., 2017). JLS1 for enhanced degradation of C16 alkane. Biological Process of Alkane Degradation by The function of hydrocarbon-degrading bacteria mainly depends on their hydrocarbon-degrading enzymes, the expression and activity of which are closely related to the physiological activity of bacteria (Mukherjee et al., 2017; Song et al., 2017). Methanoliparum. Biotechnol. Cheng, L. et al. Nucleic Acids Res. g-i, Visualization of Ca. Nature 451, 176180 (2008). Microbiol. Biol. c, Genome based Average Nucleotide Identity (ANI). The vast majority of archaea hybridized also with the probe for Ca. These properties provide promising perspectives for application of biosurfactants as potential agents for bioremediation of environment contaminated with hydrocarbons. Novel alkane hydroxylase gene (alkB) diversity in sediments associated with hydrocarbon seeps in the Timor Sea. The oxidation of hydrocarbons by diverse heterotrophic and - Nature Appl. Org. contributed to high biodegradation efficiency (89%) in a 365-day treatment of diesel oil-contaminated soil (Szulc et al., 2014). Sofie, T. et al. Wei, S. et al. However, recent culture-independent studies have suggested that the archaeon Candidatus Methanoliparum alone can combine the degradation of long-chain alkanes with methanogenesis4,5. Bioremediation of soils contaminated with polycyclic aromatic hydrocarbons, petroleum, pesticides, chlorophenols and heavy metals by composting: applications, microbes and future research needs. CAS This could be explained by phenols and quinones with higher solubility, enhancing the mass transfer of molecules to bacterial cells, resulting in higher toxic effects than the former compounds. Kanehisa, M., Sato, Y. The addition of fertilizers containing bioavailable nitrogen and phosphorus has been successfully applied to stimulate petroleum oil biodegradation on a number of different shorelines and sandy beaches (Rling et al., 2002; Hazen et al., 2016). However, few bacteria can completely mineralize complex compounds such as resins and asphaltenes because of the lack of some enzymes (Varjani, 2017). Systematic adsorption process of petroleum hydrocarbon by immobilised ADS Environ. Fate of a heavy oil in the marine environment. No use, distribution or reproduction is permitted which does not comply with these terms. 4 was the fitting result.
Time Series Analysis Python Code,
Square Group Board Of Directors,
Robert Half Staffing Manager,
Bahria Heights Apartments For Rent,
Articles H